Index

A

a1 (prodimopy.read_mc.MCParameterSet property) abs_opac_band (prodimopy.read.DataDust attribute) (prodimopy.read.DataGas attribute) abun (prodimopy.read.DataElements attribute) abun12 (prodimopy.read.DataElements attribute) abundance (prodimopy.read_slab.slab_data property) abundances (prodimopy.read_mc.Data_mc attribute) accuracy (prodimopy.chemistry.network.Reaction attribute) add_beam() (prodimopy.plot_casasim.PlotCasasim method) add_model() (prodimopy.read_slab.slab_data method) age (prodimopy.read.Data_ProDiMo attribute) ages (prodimopy.read_mc.Data_mc attribute) ageslog (prodimopy.movie.MovieABC attribute) albedo (prodimopy.read_mc.MCParameterSet property) amax (prodimopy.read.DataDust attribute) amin (prodimopy.read.DataDust attribute)

amu (prodimopy.read.DataElements attribute) analyse_chemistry() (in module prodimopy.read) (prodimopy.read.Data_ProDiMo method) (prodimopy.read_mc.Data_mc method) animate() (prodimopy.movie.CasaSimMovie method) (prodimopy.movie.ContourMovie method) (prodimopy.movie.MovieABC method) apow (prodimopy.read.DataDust attribute) arcsectopix() (prodimopy.read_casasim.CASAImage method) asize (prodimopy.interface2D.infile.DustSizeDistribution attribute) (prodimopy.read.DataDust attribute) AV (prodimopy.read.Data_ProDiMo attribute) Av (prodimopy.read_mc.MCParameterSet property) avg_quantity() (prodimopy.read.Data_ProDiMo method) AVrad (prodimopy.read.Data_ProDiMo attribute) AVver (prodimopy.read.Data_ProDiMo attribute)

B

band (prodimopy.utils_casasim.ContinuumPP attribute)

boltzmann_distribution() (in module prodimopy.read_slab)

C

calc_atrans() (in module prodimopy.interface1D.twoppToProDiMo) calc_dustcolumnd() (in module prodimopy.utils) calc_NHrad_oi() (in module prodimopy.read) calc_surfd() (in module prodimopy.read) calcLum() (prodimopy.read.DataStar method) calculate_dust_continuum() (prodimopy.run_slab.slab_model_1D method) calculate_dust_source() (prodimopy.run_slab.slab_model_1D method) calculate_mutual_overlap() (in module prodimopy.read_slab) calculate_overlap() (prodimopy.read_slab.slab method) calculate_population_grid() (in module prodimopy.postprocessing) calculate_source() (prodimopy.run_slab.slab_model_1D method) calculate_spectrum() (prodimopy.run_slab.slab_model_1D method) CASAImage (class in prodimopy.read_casasim) CasaSim (class in prodimopy.read_casasim) CasaSimContinuum (class in prodimopy.read_casasim) CasaSimMovie (class in prodimopy.movie) cblabel (prodimopy.movie.ContourMovie attribute) cdnmol (prodimopy.read.Data_ProDiMo property) chans (prodimopy.utils_casasim.ContinuumPP attribute) charge (prodimopy.read.DataSpecies attribute) check_grid() (in module prodimopy.grid) Chemistry (class in prodimopy.read) chemnet (prodimopy.read.Data_ProDiMo property) (prodimopy.read_mc.Data_mc property) chemPot (prodimopy.read.DataSpecies attribute) chgriddir() (in module prodimopy.grid) chi (prodimopy.read.Data_ProDiMo attribute) CHI1 (prodimopy.read_mc.MCParameterSet property) chi1_shielded (prodimopy.read.Data_ProDiMo attribute) chi1_unshielded (prodimopy.read.Data_ProDiMo attribute) CHI2 (prodimopy.read_mc.MCParameterSet property) chi2_shielded (prodimopy.read.Data_ProDiMo attribute) chi2_slab() (in module prodimopy.read_slab) chi2_unshielded (prodimopy.read.Data_ProDiMo attribute) chiRT (prodimopy.read.Data_ProDiMo attribute) cleanup() (prodimopy.utils_casasim.ContinuumPP method) (prodimopy.utils_casasim.LinePP method) clem (prodimopy.chemistry.network.Reaction attribute) coeffs (prodimopy.chemistry.network.Reaction attribute) colors (prodimopy.plot.Contour attribute) (prodimopy.plot_models.PlotModels attribute) comment (prodimopy.chemistry.network.Reaction attribute) Compare (class in prodimopy.compare) compare() (prodimopy.chemistry.network.Reaction method) (prodimopy.chemistry.network.ReactionNetwork method) CompareAbs (class in prodimopy.compare) compareAbundances() (prodimopy.compare.Compare method) (prodimopy.compare.CompareMc method) compareCdnmol() (prodimopy.compare.Compare method) compareChemnet() (prodimopy.compare.Compare method) compareContinuumImages() (prodimopy.compare.Compare method) compareCool() (prodimopy.compare.Compare method) compareD2g() (prodimopy.compare.Compare method) compareDamean() (prodimopy.compare.Compare method) compareDust_charge_mean() (prodimopy.compare.Compare method) compareDustOpac() (prodimopy.compare.Compare method) compareDustOpacEnv() (prodimopy.compare.Compare method) compareElements() (prodimopy.compare.Compare method) compareFileCheckChemLog() (prodimopy.compare.Compare method) compareFileCheckNetworkLog() (prodimopy.compare.Compare method) compareFitsFileFLiTs() (prodimopy.compare.Compare method) compareFitsFileLineCubes() (prodimopy.compare.Compare method) compareFitsFileMie() (prodimopy.compare.Compare method) compareFitsFileRestart() (prodimopy.compare.Compare method) compareFLiTsSpec() (prodimopy.compare.Compare method) compareFlux() (prodimopy.compare.CompareSlab1D method) compareFsize_Rho() (prodimopy.compare.Compare method) compareHeat() (prodimopy.compare.Compare method) compareHX() (prodimopy.compare.Compare method)

compareLbLFluxes() (prodimopy.compare.CompareSlab method) compareLbLPop() (prodimopy.compare.CompareSlab method) compareLbLTau() (prodimopy.compare.CompareSlab method) compareLineEstimates() (prodimopy.compare.Compare method) compareLineFluxes() (prodimopy.compare.Compare method) CompareMc (class in prodimopy.compare) compareNd() (prodimopy.compare.Compare method) compareNHtot() (prodimopy.compare.Compare method) compareRadFields() (prodimopy.compare.Compare method) compareRatecoefficients() (prodimopy.compare.CompareMc method) compareRcdnmol() (prodimopy.compare.Compare method) compareRhod() (prodimopy.compare.Compare method) compareRhog() (prodimopy.compare.Compare method) compareSED() (prodimopy.compare.Compare method) CompareSlab (class in prodimopy.compare) CompareSlab1D (class in prodimopy.compare) compareSolved_chem() (prodimopy.compare.Compare method) compareSource_function() (prodimopy.compare.CompareSlab1D method) compareSpecies() (prodimopy.chemistry.network.ReactionNetwork method) (prodimopy.compare.Compare method) compareStarSpec() (prodimopy.compare.Compare method) compareTd() (prodimopy.compare.Compare method) compareTg() (prodimopy.compare.Compare method) compareVelocity() (prodimopy.compare.Compare method) compareX() (prodimopy.compare.Compare method) compareZ() (prodimopy.compare.Compare method) compareZetaCR() (prodimopy.compare.Compare method) compareZetaX() (prodimopy.compare.Compare method) construct_2pop_sdd() (in module prodimopy.interface1D.twoppToProDiMo) contImages (prodimopy.read.Data_ProDiMo attribute) Continuum (class in prodimopy.read_casasim) ContinuumCube (class in prodimopy.read_casasim) ContinuumPP (class in prodimopy.utils_casasim) Contour (class in prodimopy.plot) ContourMovie (class in prodimopy.movie) contsub_model() (prodimopy.utils_casasim.LinePP method) conv_flux (prodimopy.read.DataFLiTsSpec attribute) conv_flux_cont (prodimopy.read.DataFLiTsSpec attribute) conv_image() (prodimopy.utils_casasim.ContinuumPP method) (prodimopy.utils_casasim.LinePP method) conv_R (prodimopy.read.DataFLiTsSpec attribute) conv_wl (prodimopy.read.DataFLiTsSpec attribute) convert_to_slab_format() (in module prodimopy.run_slab) convLTEflux (prodimopy.read_slab.slab_data property) convNLTEflux (prodimopy.read_slab.slab_data property) convolve() (in module prodimopy.read_slab) (prodimopy.read.DataFLiTsSpec method) (prodimopy.read.DataLine method) (prodimopy.read.DataLineProfile method) (prodimopy.read_slab.slab method) (prodimopy.read_slab.slab1D method) (prodimopy.read_slab.slab_data method) (prodimopy.run_slab.slab_model_1D method) convolve_custom() (prodimopy.run_slab.slab_model_1D method) convolve_overlap() (prodimopy.read_slab.slab method) (prodimopy.read_slab.slab_data method) convOverlapFreq (prodimopy.read_slab.slab_data property) convOverlapLTE (prodimopy.read_slab.slab_data property) convOverlapNLTE (prodimopy.read_slab.slab_data property) convOverlapR (prodimopy.read_slab.slab_data property) convOverlapWave (prodimopy.read_slab.slab_data property) convR (prodimopy.read_slab.slab_data property) convType (prodimopy.read_slab.slab_data property) convWavelength (prodimopy.read_slab.slab_data property) cool (prodimopy.read.Data_ProDiMo property) cool_mainidx (prodimopy.read.Data_ProDiMo attribute) cool_names (prodimopy.read.Data_ProDiMo attribute) CRI (prodimopy.read_mc.MCParameterSet property) cut() (prodimopy.read_casasim.CASAImage method)

D

d2g (prodimopy.read.Data_ProDiMo attribute) da2mean (prodimopy.read.Data_ProDiMo attribute) damean (prodimopy.read.Data_ProDiMo attribute) Data_mc (class in prodimopy.read_mc) Data_ProDiMo (class in prodimopy.read) DataBgSpec (class in prodimopy.read) DataContinuumImages (class in prodimopy.read) DataContinuumObs (class in prodimopy.read) DataDust (class in prodimopy.read) DataElements (class in prodimopy.read) DataFLiTsSpec (class in prodimopy.read) DataGas (class in prodimopy.read) DataLine (class in prodimopy.read) DataLineEstimate (class in prodimopy.read) DataLineEstimateRInfo (class in prodimopy.read) DataLineObs (class in prodimopy.read) DataLineProfile (class in prodimopy.read) DataSED (class in prodimopy.read) DataSEDAna (class in prodimopy.read) DataSpecies (class in prodimopy.read) DataStar (class in prodimopy.read) default_figsize (class in prodimopy.plot_slab) diff() (prodimopy.compare.CompareAbs method)

diffArray() (prodimopy.compare.CompareAbs method) diffArrayRel() (prodimopy.compare.CompareAbs method) diffFile() (prodimopy.compare.CompareAbs method) diffFitsFile() (prodimopy.compare.CompareAbs method) directory (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read_mc.Data_mc attribute) (prodimopy.read_slab.slab_data attribute) distance (prodimopy.read.DataLine attribute) (prodimopy.read.DataSED attribute) dNlayers (prodimopy.read.Data_ProDiMo attribute) doAll() (prodimopy.compare.CompareAbs method) doall() (prodimopy.utils_casasim.ContinuumPP method) dridxs (prodimopy.read.Chemistry attribute) duplicates() (prodimopy.chemistry.network.ReactionNetwork method) dust (prodimopy.read.Data_ProDiMo attribute) dust_charge_max (prodimopy.read.Data_ProDiMo attribute) dust_charge_mean (prodimopy.read.Data_ProDiMo attribute) dust_charge_min (prodimopy.read.Data_ProDiMo attribute) dust_to_gas (prodimopy.read_mc.MCParameterSet property) (prodimopy.read_slab.slab_data property) dustSDF (prodimopy.interface2D.infile.Interface2Din attribute) DustSizeDistribution (class in prodimopy.interface2D.infile) dv (prodimopy.read_slab.slab_data property)

E

elements (prodimopy.read.Data_ProDiMo attribute) energy (prodimopy.read.DataDust attribute)

env_dust (prodimopy.read.Data_ProDiMo attribute) eval_model_type() (in module prodimopy.compare) extinction() (prodimopy.read.DataSED method)

F

Fcolumn (prodimopy.read.DataLineEstimateRInfo attribute) fcont (prodimopy.read.DataLine property) fcontErgAng (prodimopy.read.DataLine property) field (prodimopy.movie.ContourMovie attribute) (prodimopy.plot.Contour attribute) filename (prodimopy.chemistry.network.ReactionNetwork attribute) fill_fromStr() (prodimopy.read_mc.MCParameterSet method) fill_pmodel() (prodimopy.interface2D.infile.DustSizeDistribution method) filled (prodimopy.plot.Contour attribute) fit (class in prodimopy.read_slab) fit_settings (class in prodimopy.read_slab) FLiTsSpec (prodimopy.read.Data_ProDiMo attribute) flux (prodimopy.read.DataFLiTsSpec attribute) (prodimopy.read.DataLine property) (prodimopy.read.DataLineEstimate attribute) (prodimopy.read.DataLineObs property) (prodimopy.read.DataLineProfile property) flux_cont (prodimopy.read.DataFLiTsSpec attribute) flux_conv (prodimopy.read.DataLineProfile property) flux_dust (prodimopy.read.DataLineProfile property) flux_Jy (prodimopy.read.DataLine property) (prodimopy.read.DataLineEstimate property)

flux_unit (prodimopy.read.DataLineProfile property) fluxErgAng (prodimopy.read.DataLineProfile property) fmt_timelabel (prodimopy.movie.MovieABC attribute) fnuErg (prodimopy.read.DataSED property) fnuFaceonErg (prodimopy.read.DataSED attribute) fnuJy (prodimopy.read.DataSED property) format_field() (prodimopy.read_slab.MyFormatter method) freezeout_timescale() (prodimopy.read.Data_ProDiMo method) frequency (prodimopy.read.DataLine attribute) (prodimopy.read.DataLineEstimate property) (prodimopy.read.DataLineProfile property) fridxs (prodimopy.read.Chemistry attribute) from_prodimo() (prodimopy.run_slab.slab_model_1D method) fs_legend (prodimopy.plot.Plot attribute) (prodimopy.plot_models.PlotModels attribute) fsize (prodimopy.read.DataDust attribute) fsize_rho (prodimopy.interface2D.infile.DustSizeDistribution attribute) (prodimopy.read.DataDust attribute) FWHM (prodimopy.read.DataLine property) FWHM_convolved (prodimopy.read.DataLine property)

G

g2d (prodimopy.interface2D.infile.Interface2Din attribute) gas (prodimopy.read.Data_ProDiMo attribute) gasphase (prodimopy.chemistry.network.Reaction attribute) gen_specFromLineEstimates() (prodimopy.read.Data_ProDiMo method) generalConvolve() (in module prodimopy.read_slab) generate_1D_structure() (in module prodimopy.read_slab) generate_from_obsradprof() (in module prodimopy.interface1D.infile) generate_grid() (in module prodimopy.read_slab) generate_sdd_twopop() (in module prodimopy.interface1D.infile) generate_slab_grid() (in module prodimopy.read_slab) genparamentry() (in module prodimopy.grid) genvalues() (in module prodimopy.grid) get_coord_refimage() (prodimopy.utils_casasim.ContinuumPP method) get_dust_opacity_provider() (in module prodimopy.run_slab) get_KeplerOmega() (prodimopy.read.Data_ProDiMo method) get_modeldirs() (in module prodimopy.grid) get_pmodel() (prodimopy.interface2D.infile.Interface2Din method)

get_reac_grid() (prodimopy.read.Chemistry method) get_spdata() (prodimopy.read.DataSpecies method) get_toomreQ() (prodimopy.read.Data_ProDiMo method) get_TotSpeciesMass() (prodimopy.read.Data_ProDiMo method) get_VKep() (prodimopy.read.Data_ProDiMo method) getAbun() (prodimopy.read.Data_ProDiMo method) getField2D() (in module prodimopy.plot) getImage() (prodimopy.read.DataContinuumImages method) getLine() (prodimopy.read.Data_ProDiMo method) getLineEstimate() (prodimopy.read.Data_ProDiMo method) getLineOriginMask() (prodimopy.read.Data_ProDiMo method) getSEDAnaMask() (prodimopy.read.Data_ProDiMo method) getTols() (prodimopy.compare.Compare method) gridd (prodimopy.read.Chemistry attribute) gridf (prodimopy.read.Chemistry attribute) GRIDINPUTFILE (in module prodimopy.grid) growth_function() (in module prodimopy.run_slab)

H

heat (prodimopy.read.Data_ProDiMo property) heat_mainidx (prodimopy.read.Data_ProDiMo attribute)

heat_names (prodimopy.read.Data_ProDiMo attribute) Hx (prodimopy.read.Data_ProDiMo attribute)

I

id (prodimopy.chemistry.network.Reaction attribute) ident (prodimopy.read.DataLine attribute) (prodimopy.read.DataLineEstimate attribute) idU (prodimopy.chemistry.network.Reaction attribute) inclination (prodimopy.read.DataContinuumImages property) (prodimopy.read.DataLine property) (prodimopy.read.DataSED property) init_dust() (prodimopy.run_slab.slab_model_1D method) init_figure() (prodimopy.movie.CasaSimMovie method) (prodimopy.movie.ContourMovie method) (prodimopy.movie.MovieABC method)

init_from_text() (in module prodimopy.interface2D.infile) init_gas() (prodimopy.run_slab.slab_model_1D method) init_grid() (prodimopy.run_slab.slab_model_1D method) int_ring() (prodimopy.read.Data_ProDiMo method) Interface2Din (class in prodimopy.interface2D.infile) interpol_spherical() (prodimopy.interface2D.infile.Interface2Din method) Inu (prodimopy.read.DataStar attribute) InuBand (prodimopy.read.DataStar attribute) InuInterpol (prodimopy.read.DataStar attribute) isoratio_12CO13CO (prodimopy.read.Data_ProDiMo attribute) ix (prodimopy.read.DataLineEstimateRInfo attribute) iz (prodimopy.read.DataLineEstimateRInfo attribute)

J

jlow (prodimopy.read.DataLineEstimate attribute)

jup (prodimopy.read.DataLineEstimate attribute)

K

kabs (prodimopy.read.DataDust attribute) kappaRoss (prodimopy.read.Data_ProDiMo attribute)

kext (prodimopy.read.DataDust attribute) ksca (prodimopy.read.DataDust attribute) ksca_an (prodimopy.read.DataDust attribute)

L

label_fmt (prodimopy.plot.Contour attribute) label_fontsize (prodimopy.plot.Contour attribute) label_inline_spacing (prodimopy.plot.Contour attribute) label_locations (prodimopy.plot.Contour attribute) lam (prodimopy.read.DataDust attribute) (prodimopy.read.DataGas attribute) (prodimopy.read.DataSED attribute) (prodimopy.read.DataStar attribute) lambs (prodimopy.read.Data_ProDiMo attribute) lams (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read.DataContinuumImages attribute) (prodimopy.read.DataSEDAna attribute) Lbol (prodimopy.read.DataSED property) leveldata (prodimopy.read_slab.slab_data property) levels (prodimopy.plot.Contour attribute) line_flux() (in module prodimopy.read_slab) line_flux_products() (in module prodimopy.read_slab) line_flux_ratios() (in module prodimopy.read_slab) line_fluxes() (in module prodimopy.read_slab) LineCube (class in prodimopy.read_casasim) linedata (prodimopy.read_slab.slab_data property) lineEstimates (prodimopy.read.Data_ProDiMo attribute) linefreq (prodimopy.utils_casasim.LinePP attribute) lineid (prodimopy.utils_casasim.LinePP attribute) LineIntegrated (class in prodimopy.read_casasim) LineMom1 (class in prodimopy.read_casasim) lineObs (prodimopy.read.Data_ProDiMo attribute)

LinePP (class in prodimopy.utils_casasim) LinePV (class in prodimopy.read_casasim) lines (prodimopy.read.Data_ProDiMo attribute) LineSpectralProfile (class in prodimopy.read_casasim) linestyles (prodimopy.plot.Contour attribute) linewidths (prodimopy.plot.Contour attribute) linewl (prodimopy.utils_casasim.LinePP attribute) load_mplstyle() (in module prodimopy.utils) load_rates() (prodimopy.chemistry.network.ReactionNetwork method) (prodimopy.chemistry.network.ReactionNetworkPin method) (prodimopy.chemistry.network.ReactionNetworkPout method) load_reactions() (prodimopy.chemistry.network.ReactionNetwork method) (prodimopy.chemistry.network.ReactionNetworkPin method) (prodimopy.chemistry.network.ReactionNetworkPout method) load_style() (in module prodimopy.plot) (in module prodimopy.plot_mc) (in module prodimopy.plot_models) logg (prodimopy.read.DataStar attribute) Lstar (prodimopy.read.DataStar attribute) lum (prodimopy.read.DataStar property) lumAccr (prodimopy.read.DataStar property) lumEUV (prodimopy.read.DataStar property) luminosityErgs (prodimopy.read.DataLine property) luminosityErgs() (prodimopy.read.DataLineEstimate method) luminosityWatt (prodimopy.read.DataLine property) luminosityWatt() (prodimopy.read.DataLineEstimate method) lumTot (prodimopy.read.DataStar property) lumXray (prodimopy.read.DataStar property)

M

m (prodimopy.compare.Compare attribute) (prodimopy.compare.CompareMc attribute) (prodimopy.compare.CompareSlab attribute) (prodimopy.compare.CompareSlab1D attribute) make_grid() (in module prodimopy.grid) make_movie() (prodimopy.movie.MovieABC method) mapField() (in module prodimopy.plot) mapping (prodimopy.read.ModelParameters attribute) markers (prodimopy.plot_models.PlotModels attribute) mass (prodimopy.read.DataSpecies attribute) (prodimopy.read.DataStar attribute) massRatio (prodimopy.read.DataElements attribute) MCParameterSet (class in prodimopy.read_mc) mdot (prodimopy.read.DataStar property) mdustdisk (prodimopy.read.Data_ProDiMo property) meanPlanckOpac() (prodimopy.read.Data_ProDiMo method) meanRossOpac() (prodimopy.read.Data_ProDiMo method) mgasdisk (prodimopy.read.Data_ProDiMo property) model (prodimopy.read.Chemistry attribute) model_number (prodimopy.read_slab.slab_data property) modelfits (prodimopy.utils_casasim.ContinuumPP attribute) (prodimopy.utils_casasim.LinePP attribute) ModelParameters (class in prodimopy.read) models (prodimopy.movie.MovieABC attribute) (prodimopy.read_slab.slab_data attribute) module plot_casasim plot_mc plot_slab postprocessing prodimopy.chemistry.network prodimopy.compare prodimopy.grid prodimopy.interface1D.infile prodimopy.interface1D.twoppToProDiMo prodimopy.interface2D.infile prodimopy.movie prodimopy.plot prodimopy.plot_casasim prodimopy.plot_mc prodimopy.plot_models prodimopy.plot_slab prodimopy.postprocessing prodimopy.read prodimopy.read_casasim prodimopy.read_mc prodimopy.read_slab prodimopy.run_slab prodimopy.utils prodimopy.utils_casasim read read_casasim read_mc read_slab run_slab utils_casasim

momentmap() (prodimopy.utils_casasim.LinePP method) MovieABC (class in prodimopy.movie) mref (prodimopy.compare.Compare attribute) (prodimopy.compare.CompareMc attribute) (prodimopy.compare.CompareSlab attribute) (prodimopy.compare.CompareSlab1D attribute) mstar (prodimopy.read.Data_ProDiMo property) muH (prodimopy.read.Data_ProDiMo attribute) muHamu (prodimopy.read.DataElements attribute) MyFormatter (class in prodimopy.read_slab)

N

name (prodimopy.chemistry.network.ReactionNetwork attribute) (prodimopy.read.Chemistry attribute) (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read_mc.Data_mc attribute) nbins (prodimopy.movie.MovieABC attribute) Ncol (prodimopy.read.DataLineEstimateRInfo attribute) ncol_legend (prodimopy.plot.Plot attribute) (prodimopy.plot_models.PlotModels attribute) nColl (prodimopy.read_slab.slab_data property) ncool (prodimopy.read.Data_ProDiMo attribute) nd (prodimopy.read.Data_ProDiMo attribute) ne (prodimopy.read_slab.slab_data property) nframes (prodimopy.movie.MovieABC attribute) nH (prodimopy.read_mc.MCParameterSet property) NH (prodimopy.read_slab.slab_data property) nH2 (prodimopy.read_slab.slab_data property) nHe (prodimopy.read_slab.slab_data property) nheat (prodimopy.read.Data_ProDiMo attribute) nHI (prodimopy.read_slab.slab_data property) nHII (prodimopy.read_slab.slab_data property) NHrad (prodimopy.read.Data_ProDiMo attribute) nHtot (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute)

NHver (prodimopy.read.Data_ProDiMo attribute) nhver_to_zr() (in module prodimopy.plot) nlam (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read.DataContinuumImages attribute) (prodimopy.read.DataSED attribute) (prodimopy.read.DataStar attribute) nlevels (prodimopy.read_slab.slab_data property) nlines (prodimopy.read_slab.slab_data property) nmodels (prodimopy.read_slab.slab_data property) nmol (prodimopy.read.Data_ProDiMo property) non_species (prodimopy.chemistry.network.ReactionNetwork attribute) nsize (prodimopy.read.DataDust attribute) nspec (prodimopy.read.Data_ProDiMo attribute) nu (prodimopy.read.DataSED attribute) (prodimopy.read.DataStar attribute) nuFnuW (prodimopy.read.DataSED property) nvelo (prodimopy.read.DataLineProfile attribute) nx (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read.DataContinuumImages attribute) ny (prodimopy.read.DataContinuumImages attribute) nz (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute)

O

overlapFreq (prodimopy.read_slab.slab_data property) overlapLTE (prodimopy.read_slab.slab_data property) overlapNLTE (prodimopy.read_slab.slab_data property)

overlapR (prodimopy.read_slab.slab_data property) overlapTauLTE (prodimopy.read_slab.slab_data property) overlapTauNLTE (prodimopy.read_slab.slab_data property)

P

p_dust_to_gas (prodimopy.read.Data_ProDiMo attribute) p_mdisk (prodimopy.read.Data_ProDiMo attribute) p_rho_grain (prodimopy.read.Data_ProDiMo attribute) p_v_turb (prodimopy.read.Data_ProDiMo attribute) params (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read_mc.MCParameterSet attribute) pcolors (prodimopy.plot.Plot attribute) pdf (prodimopy.plot.Plot attribute) (prodimopy.plot_models.PlotModels attribute) physicalParameters (prodimopy.read_mc.Data_mc attribute) planck() (in module prodimopy.read_slab) plog() (in module prodimopy.plot) Plot (class in prodimopy.plot) plot_1D_spectra() (in module prodimopy.plot_slab) plot_1D_structure() (in module prodimopy.plot_slab) plot_abun_midp() (prodimopy.plot.Plot method) plot_abuncont() (prodimopy.plot.Plot method) plot_abuncont_grid() (prodimopy.plot.Plot method) plot_abunrad() (prodimopy.plot.Plot method) plot_abunradial() (prodimopy.plot_models.PlotModels method) plot_abunratio() (prodimopy.plot_mc.PlotMcModels method) plot_abunvert() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_avgabun() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_casasim module plot_cdnmol() (prodimopy.plot.Plot method) plot_cont() (prodimopy.plot.Plot method) plot_cont_dion() (prodimopy.plot.Plot method) plot_contImage() (prodimopy.plot.Plot method) plot_cube() (prodimopy.plot_casasim.PlotCasasim method) plot_dust_opac() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_grid() (prodimopy.plot.Plot method) plot_heat_cool() (prodimopy.plot.Plot method) plot_integrated() (prodimopy.plot_casasim.PlotCasasim method) plot_integrated_diff() (prodimopy.plot_casasim.PlotCasasim method) plot_ionrates() (prodimopy.plot.Plot method) plot_ionrates_midplane() (prodimopy.plot.Plot method) plot_line_origin() (prodimopy.plot.Plot method) plot_line_profil() (prodimopy.plot_models.PlotModels method) plot_lineprofile() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_lines() (in module prodimopy.plot_slab) (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_mc module plot_midplane() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_mom1() (prodimopy.plot_casasim.PlotCasasim method) plot_mom1_diff() (prodimopy.plot_casasim.PlotCasasim method) plot_NH() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_opac() (prodimopy.plot.Plot method) plot_pv() (prodimopy.plot_casasim.PlotCasasim method) plot_radial() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_radprof() (prodimopy.plot_casasim.PlotCasasim method) plot_reac() (prodimopy.plot.Plot method) (prodimopy.plot_mc.PlotMcModel method) plot_reac_form_dest() (prodimopy.plot.Plot method) plot_reac_ixiz() (prodimopy.plot.Plot method) plot_reaccont() (prodimopy.plot.Plot method) plot_sed() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_sedAna() (prodimopy.plot.Plot method) plot_slab module plot_sled() (prodimopy.plot.Plot method) plot_species() (prodimopy.plot_mc.PlotMcModel method) (prodimopy.plot_mc.PlotMcModels method)

plot_species_diff() (prodimopy.plot_mc.PlotMcModels method) plot_specprof() (prodimopy.plot_casasim.PlotCasasim method) plot_spectra() (in module prodimopy.plot_slab) plot_starspec() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_starspec_xray() (prodimopy.plot_models.PlotModels method) plot_tauline() (prodimopy.plot_models.PlotModels method) plot_taulines() (prodimopy.plot.Plot method) plot_taus() (prodimopy.plot.Plot method) plot_tcdspec() (prodimopy.plot_models.PlotModels method) plot_vertical() (prodimopy.plot.Plot method) (prodimopy.plot_models.PlotModels method) plot_vertical_nH() (prodimopy.plot_models.PlotModels method) plotBoltzmannDiagram() (in module prodimopy.plot_slab) PlotCasasim (class in prodimopy.plot_casasim) plotLevelDiagram() (in module prodimopy.plot_slab) PlotMcModel (class in prodimopy.plot_mc) PlotMcModels (class in prodimopy.plot_mc) PlotModels (class in prodimopy.plot_models) postprocess_lines() (in module prodimopy.postprocessing) postprocessing module pp_tpp_results() (in module prodimopy.interface1D.twoppToProDiMo) pressure (prodimopy.read.Data_ProDiMo attribute) prodimoInf (prodimopy.read.DataLine attribute) prodimopy.chemistry.network module prodimopy.compare module prodimopy.grid module prodimopy.interface1D.infile module prodimopy.interface1D.twoppToProDiMo module prodimopy.interface2D.infile module prodimopy.movie module prodimopy.plot module prodimopy.plot_casasim module prodimopy.plot_mc module prodimopy.plot_models module prodimopy.plot_slab module prodimopy.postprocessing module prodimopy.read module prodimopy.read_casasim module prodimopy.read_mc module prodimopy.read_slab module prodimopy.run_slab module prodimopy.utils module prodimopy.utils_casasim module products (prodimopy.chemistry.network.Reaction attribute) profile (prodimopy.read.DataLine property) (prodimopy.read.DataLineObs property) profile_function() (in module prodimopy.read_slab) proj (prodimopy.utils_casasim.ContinuumPP attribute) (prodimopy.utils_casasim.LinePP attribute)

R

r (prodimopy.read.DataStar attribute) r15 (prodimopy.read.DataSEDAna attribute) r85 (prodimopy.read.DataSEDAna attribute) radFields (prodimopy.read.Data_ProDiMo property) radial_profile() (prodimopy.utils_casasim.ContinuumPP method) (prodimopy.utils_casasim.LinePP method) RadialProfile (class in prodimopy.read_casasim) radprof() (in module prodimopy.utils_casasim) rate (prodimopy.chemistry.network.Reaction attribute) ratecoefficients (prodimopy.read_mc.Data_mc attribute) rateH2diss (prodimopy.read.Data_ProDiMo attribute) rateH2form (prodimopy.read.Data_ProDiMo attribute) rcdnmol (prodimopy.read.Data_ProDiMo property) reac_rates_ix_iz() (in module prodimopy.read) (prodimopy.read.Chemistry method) reac_to_str() (prodimopy.read.Chemistry method) reactants (prodimopy.chemistry.network.Reaction attribute) Reaction (class in prodimopy.chemistry.network) ReactionNetwork (class in prodimopy.chemistry.network) ReactionNetworkPin (class in prodimopy.chemistry.network) ReactionNetworkPout (class in prodimopy.chemistry.network) reactions (prodimopy.chemistry.network.ReactionNetwork attribute) reacToStr() (in module prodimopy.plot) read module read_1D_slab() (in module prodimopy.read_slab) read_bgSpec() (in module prodimopy.read) read_casasim module read_continuumImages() (in module prodimopy.read) read_continuumObs() (in module prodimopy.read) read_dust() (in module prodimopy.read) read_dust_charge() (in module prodimopy.read) read_dust_fsize() (in module prodimopy.read) read_dust_sigmaa() (in module prodimopy.read) read_elements() (in module prodimopy.read) read_FLiTs() (in module prodimopy.read) read_gas() (in module prodimopy.read) read_lineEstimates() (in module prodimopy.read) read_linefluxes() (in module prodimopy.read) read_lineObs() (in module prodimopy.read) read_lineObsProfile() (in module prodimopy.read) read_mc module

read_mc() (in module prodimopy.read_mc) read_mc_final() (in module prodimopy.read_mc) read_opac_data() (in module prodimopy.read) read_overlap_spectra() (in module prodimopy.read_slab) read_partition_sums() (in module prodimopy.run_slab) read_prodimo() (in module prodimopy.read) read_Qmatrix() (prodimopy.run_slab.slab_model_1D method) read_sed() (in module prodimopy.read) read_slab module read_slab() (in module prodimopy.read_slab) read_species() (in module prodimopy.read) read_star() (in module prodimopy.read) read_starSpec() (in module prodimopy.read) read_tdep_file() (in module prodimopy.read_mc) read_umist() (in module prodimopy.read_mc) red_chi2_slab() (in module prodimopy.read_slab) red_chi2_slab_multi() (in module prodimopy.read_slab) red_chi2_slab_weighted() (in module prodimopy.read_slab) regrid_image() (prodimopy.utils_casasim.ContinuumPP method) remove_model() (prodimopy.read_slab.slab_data method) renameSpecies() (prodimopy.chemistry.network.ReactionNetwork method) reset_units() (prodimopy.run_slab.slab_model_1D method) residual_image() (prodimopy.utils_casasim.ContinuumPP method) restfrequency (prodimopy.read.DataLineProfile attribute) restfrq (prodimopy.read_casasim.CasaSim property) restwl (prodimopy.read_casasim.CasaSim property) rho_gr (prodimopy.read_mc.MCParameterSet property) rhod (prodimopy.read.Data_ProDiMo attribute) rhog (prodimopy.read.Data_ProDiMo attribute) rhoGas (prodimopy.interface2D.infile.Interface2Din attribute) rInfo (prodimopy.read.DataLineEstimate property) rInfo_Fcolumn (prodimopy.read.DataLineEstimate property) rInfo_Ncol (prodimopy.read.DataLineEstimate property) rInfo_tauDust (prodimopy.read.DataLineEstimate property) rInfo_tauLine (prodimopy.read.DataLineEstimate property) run_0D_point() (in module prodimopy.run_slab) run_0D_slab() (in module prodimopy.run_slab) run_0D_slab_grid() (in module prodimopy.run_slab) run_1D_radial_slab() (in module prodimopy.run_slab) run_grid() (in module prodimopy.grid) run_model() (prodimopy.run_slab.slab_model_1D method) run_slab module

S

sca_opac_band (prodimopy.read.DataDust attribute) (prodimopy.read.DataGas attribute) scale_figs() (in module prodimopy.plot) sdd (prodimopy.read.Data_ProDiMo property) sdg (prodimopy.read.Data_ProDiMo property) sed (prodimopy.read.Data_ProDiMo property) sedAna (prodimopy.read.DataSED attribute) sedinc() (prodimopy.read.Data_ProDiMo method) sedObs (prodimopy.read.Data_ProDiMo attribute) sel_lowest_chisquare() (in module prodimopy.grid) sel_param_val() (in module prodimopy.grid) selectLineEstimates() (prodimopy.read.Data_ProDiMo method) selectLines() (prodimopy.read.Data_ProDiMo method) set_default_figsize() (in module prodimopy.plot_slab) set_param() (in module prodimopy.utils) setLbolTbol() (prodimopy.read.DataSED method) show() (prodimopy.read_slab.slab method) (prodimopy.read_slab.slab1D method) (prodimopy.read_slab.slab_data method) showlabels (prodimopy.plot.Contour attribute) sigmaa (prodimopy.read.DataDust attribute) sizedist_from_sigmaa() (in module prodimopy.interface1D.twoppToProDiMo) slab (class in prodimopy.read_slab) slab1D (class in prodimopy.read_slab) slab_data (class in prodimopy.read_slab) slab_model_1D (class in prodimopy.run_slab) solve_dust_settle() (prodimopy.run_slab.slab_model_1D method)

solved_chem (prodimopy.read.Data_ProDiMo attribute) soundspeed (prodimopy.read.Data_ProDiMo attribute) spec_abs_opac_band (prodimopy.read.DataGas attribute) spec_sca_opac_band (prodimopy.read.DataGas attribute) specConvolve() (in module prodimopy.read_slab) species (prodimopy.chemistry.network.ReactionNetwork property) (prodimopy.movie.ContourMovie attribute) (prodimopy.read.Chemistry attribute) (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read.DataLine attribute) (prodimopy.read_casasim.CasaSim property) (prodimopy.read_mc.Data_mc attribute) species_index (prodimopy.read_slab.slab_data property) species_name (prodimopy.read_slab.slab_data property) species_number (prodimopy.read_slab.slab_data property) specprof_xy_hist() (prodimopy.plot_casasim.PlotCasasim method) specs (prodimopy.read.DataContinuumObs attribute) spectral_flux() (in module prodimopy.read_slab) spectral_flux_products() (in module prodimopy.read_slab) spectral_flux_ratios() (in module prodimopy.read_slab) spectral_fluxes() (in module prodimopy.read_slab) spectral_profile() (prodimopy.utils_casasim.LinePP method) spnames (prodimopy.read.Data_ProDiMo attribute) spnToLatex() (in module prodimopy.plot) star (prodimopy.read.Data_ProDiMo attribute) starSpec (prodimopy.read.Data_ProDiMo property) streamplot_overlay() (prodimopy.plot.Plot method) styles (prodimopy.plot_models.PlotModels attribute)

T

tauchem (prodimopy.read.Data_ProDiMo attribute) taucool (prodimopy.read.Data_ProDiMo attribute) taudiff (prodimopy.read.Data_ProDiMo attribute) tauDust (prodimopy.read.DataLineEstimateRInfo attribute) tauLine (prodimopy.read.DataLineEstimateRInfo attribute) tauX1 (prodimopy.read.Data_ProDiMo attribute) tauX10 (prodimopy.read.Data_ProDiMo attribute) tauX5 (prodimopy.read.Data_ProDiMo attribute) Tbol (prodimopy.read.DataSED property) td (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read_mc.MCParameterSet property) Td (prodimopy.read_slab.slab_data property) td_fileIdx (prodimopy.read.Data_ProDiMo attribute) tdust (prodimopy.interface2D.infile.Interface2Din attribute)

teff (prodimopy.read.DataStar attribute) temps (prodimopy.chemistry.network.Reaction attribute) tg (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read_mc.MCParameterSet property) Tg (prodimopy.read_slab.slab_data property) tgas (prodimopy.interface2D.infile.Interface2Din attribute) timescalefac (prodimopy.movie.MovieABC attribute) title (prodimopy.plot.Plot attribute) tolerances (prodimopy.compare.Compare attribute) toProDiMo() (prodimopy.interface2D.infile.Interface2Din method) totdrate (prodimopy.read.Chemistry attribute) totfrate (prodimopy.read.Chemistry attribute) twopp_to_ProDiMo() (in module prodimopy.interface1D.twoppToProDiMo) type (prodimopy.chemistry.network.Reaction attribute)

U

unit_conversions() (prodimopy.run_slab.slab_model_1D method)

utils_casasim module

V

velo (prodimopy.read.DataLineProfile attribute) velocity (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute)

velocity_xz (prodimopy.read.Data_ProDiMo property) vol (prodimopy.read.Data_ProDiMo property) vturb (prodimopy.read_mc.MCParameterSet property) (prodimopy.read_slab.slab_data property)

W

Wdil (prodimopy.read_slab.slab_data property) wl (prodimopy.read.DataFLiTsSpec attribute) (prodimopy.read.DataLine attribute) (prodimopy.read.DataLineEstimate attribute) (prodimopy.read.DataLineProfile property) wlInterpol (prodimopy.read.DataStar attribute) write() (in module prodimopy.interface1D.infile) write_fits() (prodimopy.interface2D.infile.Interface2Din method)

write_radprof() (in module prodimopy.utils_casasim) write_reactions() (prodimopy.chemistry.network.ReactionNetworkPin method) write_text() (prodimopy.interface2D.infile.Interface2Din method) write_to_file() (prodimopy.read_slab.slab method) (prodimopy.read_slab.slab_data method) writeV1() (in module prodimopy.interface1D.infile) writeV2() (in module prodimopy.interface1D.infile) writeV3() (in module prodimopy.interface1D.infile) writeV4() (in module prodimopy.interface1D.infile)

X

x (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute) (prodimopy.read.DataContinuumImages attribute)

Y

y (prodimopy.read.DataContinuumImages attribute)

Z

z (prodimopy.interface2D.infile.Interface2Din attribute) (prodimopy.read.Data_ProDiMo attribute) z15 (prodimopy.read.DataLineEstimateRInfo attribute) (prodimopy.read.DataSEDAna attribute) z85 (prodimopy.read.DataLineEstimateRInfo attribute) (prodimopy.read.DataSEDAna attribute)

zetaCR (prodimopy.read.Data_ProDiMo attribute) zetaSTCR (prodimopy.read.Data_ProDiMo attribute) zetaX (prodimopy.read.Data_ProDiMo attribute) zlim (prodimopy.movie.ContourMovie attribute) ztauD1 (prodimopy.read.DataLineEstimateRInfo attribute)